Package org.snpeff.nextProt
Class NextProtSequenceConservation
java.lang.Object
org.snpeff.nextProt.NextProtSequenceConservation
A simple analysis of sequence conservation for each entry type
Why? Many NextProt annotations are only a few amino acids long (or only 1 AA) and often
they only involve very specific sequences
If the sequence is highly conserved and a non-synonymous mutation occurs, then
this might be disruptive (i.e. HIGH IMPACT)
- Author:
- Pablo Cingolani
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Field Summary
FieldsModifier and TypeFieldDescriptionstatic final int
static final double
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Constructor Summary
Constructors -
Method Summary
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Field Details
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HIGHLY_CONSERVED_AA_PERCENT
public static final double HIGHLY_CONSERVED_AA_PERCENT- See Also:
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HIGHLY_CONSERVED_AA_COUNT
public static final int HIGHLY_CONSERVED_AA_COUNT- See Also:
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Constructor Details
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NextProtSequenceConservation
public NextProtSequenceConservation()
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Method Details
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add
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