Class LeadingEdgeFractionAlgorithm


public class LeadingEdgeFractionAlgorithm extends FisherPValueGreedyAlgorithm
Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"
Author:
pablocingolani
  • Field Details

    • SCORE_CUTOFF_QUANTILE_DEFAULT

      public static final double SCORE_CUTOFF_QUANTILE_DEFAULT
      See Also:
    • ONE

      public static final org.apfloat.Apfloat ONE
  • Constructor Details

    • LeadingEdgeFractionAlgorithm

      public LeadingEdgeFractionAlgorithm(GeneSets geneSets, int numberToSelect, boolean orderDescending)
  • Method Details

    • setOrderDescending

      public void setOrderDescending(boolean orderDescending)
    • setpValueCutOffQuantile

      public void setpValueCutOffQuantile(double pValueCutOffQuantile)