Package org.snpeff.geneSets
Class Result
java.lang.Object
org.snpeff.geneSets.Result
- All Implemented Interfaces:
Comparable<Result>
Store a result form a greedy search algorithm
- Author:
- Pablo Cingolani
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
addGeneSetCount
(int count) Add an item to the list of countsint
int
org.apfloat.Apfloat
double
P-Value adjusted usingdouble
boolean
isEmpty()
void
Ser a new list and pvaluevoid
setGeneSetCount
(List<Integer> geneSetCount) void
setGeneSetCountLast
(int count) void
setGeneSets
(List<GeneSet> newGeneSets) Assign geneSetsvoid
setPvalue
(double pValue) void
setPvalue
(org.apfloat.Apfloat pValue) toString()
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Constructor Details
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Result
public Result() -
Result
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Result
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Result
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Method Details
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addGeneSetCount
public void addGeneSetCount(int count) Add an item to the list of counts- Parameters:
count
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compareTo
- Specified by:
compareTo
in interfaceComparable<Result>
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getGeneSetCount
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getGeneSetCountLast
public int getGeneSetCountLast() -
getGeneSets
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getLatestGeneSet
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getPvalue
public org.apfloat.Apfloat getPvalue() -
getPvalueAdjusted
public double getPvalueAdjusted()P-Value adjusted using- Returns:
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getPvalueDouble
public double getPvalueDouble() -
isEmpty
public boolean isEmpty() -
set
Ser a new list and pvalue- Parameters:
geneSets
-pvalue
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setGeneSetCount
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setGeneSetCountLast
public void setGeneSetCountLast(int count) -
setGeneSets
Assign geneSets- Parameters:
newGeneSets
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setPvalue
public void setPvalue(org.apfloat.Apfloat pValue) -
setPvalue
public void setPvalue(double pValue) -
toString
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