Package org.snpeff.interval.codonChange
Class CodonChangeSnp
java.lang.Object
org.snpeff.interval.codonChange.CodonChange
org.snpeff.interval.codonChange.CodonChangeSnp
Calculate codon changes produced by a SNP
- Author:
- pcingola
-
Field Summary
Fields inherited from class org.snpeff.interval.codonChange.CodonChange
CODON_SIZE, showCodonChange
-
Constructor Summary
ConstructorsConstructorDescriptionCodonChangeSnp
(Variant variant, Transcript transcript, VariantEffects variantEffects) -
Method Summary
Methods inherited from class org.snpeff.interval.codonChange.CodonChange
additionalEffect, cdsBaseNumber, codonChange, codonsRef, effect, effectNoCodon, effectNoCodon, factory, intersectsExons, netCdsChange, toString
-
Constructor Details
-
CodonChangeSnp
-
-
Method Details
-
codonChange
Analyze SNPs in this transcript. Add changeEffect to 'changeEffect'- Overrides:
codonChange
in classCodonChange
-
codonsAlt
Get new (modified) codons- Overrides:
codonsAlt
in classCodonChange
-
codonsRef
Get original codons in CDS- Overrides:
codonsRef
in classCodonChange
-