Package org.snpeff.fileIterator
Class GenericMarkerFileIterator
java.lang.Object
org.snpeff.fileIterator.FileIterator<GenericMarker>
org.snpeff.fileIterator.MarkerFileIterator<GenericMarker>
org.snpeff.fileIterator.GenericMarkerFileIterator
- All Implemented Interfaces:
Iterable<GenericMarker>
,Iterator<GenericMarker>
Opens a file and creates generic markers (one per line)
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.fileIterator.MarkerFileIterator
createChromos, genome, ignoreChromosomeErrors, inOffset
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Constructor Summary
ConstructorsConstructorDescriptionGenericMarkerFileIterator
(String fileName, int colChr, int colStart, int colEnd, int inOffset) -
Method Summary
Methods inherited from class org.snpeff.fileIterator.MarkerFileIterator
getChromosome, getGenome, init, isIgnoreChromosomeErrors, loadMarkers, parsePosition, sanityCheckChromo, setCreateChromos, setIgnoreChromosomeErrors, setInOffset
Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, isDebug, iterator, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface java.lang.Iterable
forEach, spliterator
Methods inherited from interface java.util.Iterator
forEachRemaining
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Constructor Details
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GenericMarkerFileIterator
public GenericMarkerFileIterator(String fileName, int colChr, int colStart, int colEnd, int inOffset)
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Method Details
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readNext
Description copied from class:FileIterator
Read next element- Specified by:
readNext
in classFileIterator<GenericMarker>
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