Class SnpEffPredictorFactoryGenesFile

java.lang.Object
org.snpeff.snpEffect.factory.SnpEffPredictorFactory
org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGenesFile

public class SnpEffPredictorFactoryGenesFile extends SnpEffPredictorFactory
This class creates a SnpEffectPredictor from a file (or a set of files) and a configuration The files used are: - genes.txt : Biomart query from Ensembl (see scripts/genes_dataset.xml) - Fasta files: One per chromosome (as described in the config file)
Author:
pcingola