Package org.snpeff.fastq
Class FastqTrimmerMedian
java.lang.Object
org.snpeff.fastq.FastqTrimmer
org.snpeff.fastq.FastqTrimmerMedian
- Direct Known Subclasses:
FastqTrimmerAdrian
Trim fastq sequence when median quality drops below a threshold
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.fastq.FastqTrimmer
debug
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Constructor Summary
ConstructorsConstructorDescriptionFastqTrimmerMedian
(int qualityThreshold, int minBases, int runningMedianLength) -
Method Summary
Methods inherited from class org.snpeff.fastq.FastqTrimmer
trim
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Constructor Details
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FastqTrimmerMedian
public FastqTrimmerMedian(int qualityThreshold, int minBases, int runningMedianLength)
-