Class SequenceComplexity

java.lang.Object
org.snpeff.complexity.SequenceComplexity

public class SequenceComplexity extends Object
Measures the complexity of a sequence Ideally we'd like to measure the Kolmogorov complexity of the sequence. Unfortunately it is not a computable function (see http://en.wikipedia.org/wiki/Kolmogorov_complexity)
Author:
pcingola
  • Constructor Details

    • SequenceComplexity

      public SequenceComplexity()
  • Method Details

    • complexity

      public int complexity(String seq)
      Measure string's complexity
    • ratio

      public double ratio(String seq)
      Measure string's complexity ratio. I.e. complexity(seq) / seq.length